# All posts in the course

### Continuous & discrete character evolution using the threshold model

The threshold model

### Plotting methods for comparative data and phylogenies

Various visualization methods for comparative trait data and phylogenetic trees

### Placing missing taxa and fossils on a phylogenetic tree using continuous traits

locate.yeti using the Anolis dataset

### Bisse And Hisse_files/mathjax

/* * /MathJax.js * * Copyright (c) 2009-2015 The MathJax Consortium * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */

### Multi-regime challenge question

Exploring multi-regime and multivariate models in R

### Multi-rate, multi-regime, and multivariate models for continuous traits

Fitting multiple regime models for continuous characters in R

### Testing for an evolutionary correlation between binary characters using Pagel's (1994) method

Pagel's (1994) method

### Character evolution challenge solution

Solution to the challenge problem

### Reconstruction ancestral characters II, Discrete characters

Discrete character ancestral state reconstruction in R

### Reconstruction ancestral characters I, Continuous characters

Continuous character ancestral state reconstruction in R

### Phylogenetic Generalized Least Squares (PGLS)

Use PGLS to test for character correlations

### Diversification analysis with BAMM and RPANDA

Using BAMM and RPANDA to assess diversification rates from molecular phylogenies

### Simulating Brownian motion in R

Introduction to conducting phylogeny & character simulations in R

### Phylogenetically independent contrasts

Phylogenetically independent contrasts in R

### Introduction to phylogenies in R

Introduction to the "phylo" object class and basic phylogenetics packages & functions in R

### Exploring the properties of contrasts regression

Answers to the PIC challenge question

### Short Introduction to R

Basic R functions.

### Course logistics

Basic travel, lodging, and contact information for the course.

### Diversification models

Understand birth-death and trait-dependent bd models.

### Models of continuous character evolution

Fit a series of evolutionary models for continuous characters.