Continuous & discrete character evolution using the threshold model
The threshold model
Plotting methods for comparative data and phylogenies
Various visualization methods for comparative trait data and phylogenetic trees
Placing missing taxa and fossils on a phylogenetic tree using continuous traits
locate.yeti using the Anolis dataset
Bisse And Hisse_files/mathjax
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Multi-regime challenge question
Exploring multi-regime and multivariate models in R
Multi-rate, multi-regime, and multivariate models for continuous traits
Fitting multiple regime models for continuous characters in R
Testing for an evolutionary correlation between binary characters using Pagel's (1994) method
Pagel's (1994) method
Here are data from some fish called grunts.
Character evolution challenge solution
Solution to the challenge problem
Reconstruction ancestral characters II, Discrete characters
Discrete character ancestral state reconstruction in R
Reconstruction ancestral characters I, Continuous characters
Continuous character ancestral state reconstruction in R
Phylogenetic Generalized Least Squares (PGLS)
Use PGLS to test for character correlations
Diversification analysis with BAMM and RPANDA
Using BAMM and RPANDA to assess diversification rates from molecular phylogenies
evolutionary biologists HATE this fast way to get into Nature
this is a test of Alfaro documents
Simulating Brownian motion in R
Introduction to conducting phylogeny & character simulations in R
Phylogenetically independent contrasts
Phylogenetically independent contrasts in R
Introduction to phylogenies in R
Introduction to the "phylo" object class and basic phylogenetics packages & functions in R
Exploring the properties of contrasts regression
Answers to the PIC challenge question
Short Introduction to R
Basic R functions.
Basic travel, lodging, and contact information for the course.
Understand birth-death and trait-dependent bd models.
Models of continuous character evolution
Fit a series of evolutionary models for continuous characters.